IL_6T7T_184

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

6T7T|1|C2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_184 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.1603

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6T7T|1|C2|G|895
6T7T|1|C2|U|896
6T7T|1|C2|C|897
6T7T|1|C2|A|898
6T7T|1|C2|G|899
*
6T7T|1|C2|C|910
6T7T|1|C2|U|911
6T7T|1|C2|U|912
6T7T|1|C2|G|913
6T7T|1|C2|G|914
6T7T|1|C2|A|915
6T7T|1|C2|U|916
6T7T|1|C2|U|917

Current chains

Chain C2

18S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain SB

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S14-B