IL_6T7T_188

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAU*GCAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_188 not in the Motif Atlas

Geometric match to IL_4V88_438

Geometric discrepancy: 0.1366

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6T7T|1|C2|G|1041
6T7T|1|C2|G|1042
6T7T|1|C2|A|1043
6T7T|1|C2|U|1044
*
6T7T|1|C2|G|1074
6T7T|1|C2|C|1075
6T7T|1|C2|A|1076
6T7T|1|C2|C|1077

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein S0-A

Chain SB

40S ribosomal protein S1-A

Chain SN

40S ribosomal protein S13

Chain Sa

40S ribosomal protein S26-B