IL_6T7T_195

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_195 not in the Motif Atlas

Geometric match to IL_6DTD_003

Geometric discrepancy: 0.1722

The information below is about IL_6DTD_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6T7T|1|C2|G|1178
6T7T|1|C2|G|1179
*
6T7T|1|C2|C|1459
6T7T|1|C2|A|1460
6T7T|1|C2|C|1461

Current chains

Chain C2

18S rRNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18-A