IL_6T7T_196
3D structure
- PDB id
- 6T7T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUC*GUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6T7T_196 not in the Motif Atlas
- Geometric match to IL_3SZX_003
- Geometric discrepancy: 0.1297
- The information below is about IL_3SZX_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
6T7T|1|C2|G|1213
6T7T|1|C2|U|1214
6T7T|1|C2|C|1215
*
6T7T|1|C2|G|1448
6T7T|1|C2|U|1449
6T7T|1|C2|U|1450
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SK
- 40S ribosomal protein S10-A
- Chain SP
- 40S ribosomal protein S15
- Chain Sd
- 40S ribosomal protein S29-A
- Chain Sf
- Ubiquitin-40S ribosomal protein S31
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