IL_6T7T_225

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_225 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.1621

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6T7T|1|C2|A|1678
6T7T|1|C2|G|1679
6T7T|1|C2|G|1680
6T7T|1|C2|A|1681
6T7T|1|C2|U|1682
*
6T7T|1|C2|A|1719
6T7T|1|C2|G|1720
6T7T|1|C2|A|1721
6T7T|1|C2|A|1722
6T7T|1|C2|U|1723

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24-A

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8