IL_6T83_009

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AACU*AGU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_009 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3147

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

6T83|1|1b|A|164
6T83|1|1b|A|165
6T83|1|1b|C|166
6T83|1|1b|U|167
*
6T83|1|1b|A|255
6T83|1|1b|G|256
6T83|1|1b|U|257

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain Ly

60S ribosomal protein L13-A

Chain hb

60S ribosomal protein L35-A