IL_6T83_023

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_023 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.1186

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6T83|1|1b|G|725
6T83|1|1b|G|726
6T83|1|1b|G|727
6T83|1|1b|G|728
*
6T83|1|1b|U|741
6T83|1|1b|G|742
6T83|1|1b|C|743
6T83|1|1b|A|744
6T83|1|1b|C|745

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain Qy

60S ribosomal protein L18-A

Chain by

60S ribosomal protein L29