3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
GGG*UAAUC
Length
8 nucleotides
Bulged bases
6T83|1|1b|G|908, 6T83|1|1b|A|920, 6T83|1|1b|A|921
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T83_033 not in the Motif Atlas
Geometric match to IL_5J7L_265
Geometric discrepancy: 0.1637
The information below is about IL_5J7L_265
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_06549.2
Basepair signature
cWW-cWW
Number of instances in this motif group
6

Unit IDs

6T83|1|1b|G|907
6T83|1|1b|G|908
6T83|1|1b|G|909
*
6T83|1|1b|U|919
6T83|1|1b|A|920
6T83|1|1b|A|921
6T83|1|1b|U|922
6T83|1|1b|C|923

Current chains

Chain 1b
25S rRNA

Nearby chains

Chain Ay
60S ribosomal protein L2-A
Chain Ny
60S ribosomal protein L15-A
Chain Py
60S ribosomal protein L17-A
Chain jb
60S ribosomal protein L37-A

Coloring options:


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