3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
UUCCG*UGA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T83_043 not in the Motif Atlas
Geometric match to IL_3TD0_002
Geometric discrepancy: 0.2918
The information below is about IL_3TD0_002
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_57744.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
22

Unit IDs

6T83|1|1b|U|1014
6T83|1|1b|U|1015
6T83|1|1b|C|1016
6T83|1|1b|C|1017
6T83|1|1b|G|1018
*
6T83|1|1b|U|1034
6T83|1|1b|G|1035
6T83|1|1b|A|1036

Current chains

Chain 1b
25S rRNA

Nearby chains

Chain Jy
60S ribosomal protein L11-A

Coloring options:


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