3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CGU*AGUG
Length
7 nucleotides
Bulged bases
6T83|1|1b|G|1429
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T83_056 not in the Motif Atlas
Homologous match to IL_8C3A_061
Geometric discrepancy: 0.158
The information below is about IL_8C3A_061
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_73554.3
Basepair signature
cWW-cWS-cWW
Number of instances in this motif group
10

Unit IDs

6T83|1|1b|C|1376
6T83|1|1b|G|1377
6T83|1|1b|U|1378
*
6T83|1|1b|A|1428
6T83|1|1b|G|1429
6T83|1|1b|U|1430
6T83|1|1b|G|1431

Current chains

Chain 1b
25S rRNA

Nearby chains

Chain 3b
5.8S ribosomal RNA; 5.8S rRNA
Chain Cy
60S ribosomal protein L4-A
Chain ay
60S ribosomal protein L28
Chain ey
60S ribosomal protein L32

Coloring options:


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