IL_6T83_063

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_063 not in the Motif Atlas

Homologous match to IL_8C3A_070

Geometric discrepancy: 0.2052

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

6T83|1|1b|G|1618
6T83|1|1b|A|1619
6T83|1|1b|U|1620
6T83|1|1b|A|1621
*
6T83|1|1b|U|1824
6T83|1|1b|G|1825
6T83|1|1b|C|1826

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain 3b

5.8S ribosomal RNA; 5.8S rRNA

Chain kb

60S ribosomal protein L38