IL_6T83_127

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_127 not in the Motif Atlas

Homologous match to IL_8C3A_135

Geometric discrepancy: 0.1785

The information below is about IL_8C3A_135

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6T83|1|1b|U|3300
6T83|1|1b|U|3301
6T83|1|1b|U|3302
6T83|1|1b|G|3303
*
6T83|1|1b|C|3311
6T83|1|1b|U|3312
6T83|1|1b|U|3313
6T83|1|1b|A|3314

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain By

60S ribosomal protein L3

Chain Py

60S ribosomal protein L17-A

Chain dy

60S ribosomal protein L31-A