IL_6T83_137

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

6T83|1|2b|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_137 not in the Motif Atlas

Geometric match to IL_4V88_386

Geometric discrepancy: 0.1541

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6T83|1|2b|U|37
6T83|1|2b|C|38
6T83|1|2b|A|39
6T83|1|2b|A|40
6T83|1|2b|A|41
*
6T83|1|2b|U|466
6T83|1|2b|G|467
6T83|1|2b|A|468
6T83|1|2b|C|469
6T83|1|2b|A|470
6T83|1|2b|A|471

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Eb

40S ribosomal protein S4-A

Chain Jb

40S ribosomal protein S9-A

Chain Yb

40S ribosomal protein S24-A