IL_6T83_145

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6T83|1|2b|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_145 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.5722

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6T83|1|2b|G|143
6T83|1|2b|U|144
6T83|1|2b|A|145
6T83|1|2b|U|146
6T83|1|2b|A|147
6T83|1|2b|A|148
6T83|1|2b|C|149
*
6T83|1|2b|G|165
6T83|1|2b|C|166
6T83|1|2b|U|167
6T83|1|2b|A|168
6T83|1|2b|A|169
6T83|1|2b|U|170
6T83|1|2b|A|171
6T83|1|2b|C|172

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Gb

40S ribosomal protein S6-A

Chain Wy

60S ribosomal protein L24-A

Chain Yb

40S ribosomal protein S24-A