IL_6T83_165

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_165 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2206

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6T83|1|2b|A|550
6T83|1|2b|G|551
6T83|1|2b|G|552
6T83|1|2b|G|553
6T83|1|2b|C|554
6T83|1|2b|A|555
6T83|1|2b|A|556
6T83|1|2b|G|557
*
6T83|1|2b|C|587
6T83|1|2b|U|588

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Cb

40S ribosomal protein S2

Chain Jb

40S ribosomal protein S9-A

Chain eb

40S ribosomal protein S30-A