IL_6T83_189

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_189 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1417

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6T83|1|2b|G|1111
6T83|1|2b|G|1112
6T83|1|2b|A|1113
6T83|1|2b|G|1114
6T83|1|2b|U|1115
6T83|1|2b|A|1116
6T83|1|2b|U|1117
6T83|1|2b|G|1118
*
6T83|1|2b|U|1129
6T83|1|2b|G|1130
6T83|1|2b|A|1131
6T83|1|2b|A|1132
6T83|1|2b|A|1133
6T83|1|2b|C|1134

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain 1b

Large subunit ribosomal RNA; LSU rRNA

Chain Xb

40S ribosomal protein S23-A

Chain nb

60S ribosomal protein L41-A