IL_6T83_205

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_205 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2211

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6T83|1|2b|U|1335
6T83|1|2b|A|1336
6T83|1|2b|A|1337
*
6T83|1|2b|U|1415
6T83|1|2b|G|1416

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Qb

40S ribosomal protein S16-A

Chain Rb

40S ribosomal protein S17-B

Chain Ub

40S ribosomal protein S20

Chain db

40S ribosomal protein S29-A