IL_6T83_219

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_219 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.126

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6T83|1|2b|C|1653
6T83|1|2b|G|1654
6T83|1|2b|A|1655
6T83|1|2b|U|1656
*
6T83|1|2b|A|1744
6T83|1|2b|G|1745
6T83|1|2b|A|1746
6T83|1|2b|G|1747

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain 1b

Large subunit ribosomal RNA; LSU rRNA

Chain Vy

60S ribosomal protein L23-A

Chain nb

60S ribosomal protein L41-A