IL_6T83_225

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_225 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.1678

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6T83|1|2b|A|1678
6T83|1|2b|G|1679
6T83|1|2b|G|1680
6T83|1|2b|A|1681
6T83|1|2b|U|1682
*
6T83|1|2b|A|1719
6T83|1|2b|G|1720
6T83|1|2b|A|1721
6T83|1|2b|A|1722
6T83|1|2b|U|1723

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Gb

40S ribosomal protein S6-A

Chain Ib

40S ribosomal protein S8-A

Chain Wy

60S ribosomal protein L24-A