IL_6T83_235
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 6T83|1|4b|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6T83_235 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.1563
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6T83|1|4b|A|72
6T83|1|4b|C|73
6T83|1|4b|C|74
6T83|1|4b|G|75
6T83|1|4b|A|76
6T83|1|4b|G|77
6T83|1|4b|U|78
6T83|1|4b|A|79
6T83|1|4b|G|80
*
6T83|1|4b|C|100
6T83|1|4b|G|101
6T83|1|4b|A|102
6T83|1|4b|A|103
6T83|1|4b|A|104
6T83|1|4b|C|105
6T83|1|4b|U|106
Current chains
- Chain 4b
- 5S rRNA
Nearby chains
- Chain 1b
- Large subunit ribosomal RNA; LSU rRNA
- Chain Fy
- 60S ribosomal protein L7-A
- Chain Iy
- 60S ribosomal protein L10
- Chain Sy
- 60S ribosomal protein L20-A
- Chain Ty
- 60S ribosomal protein L21-A
Coloring options: