IL_6T83_267

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAAGC*GUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_267 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.1691

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

6T83|1|Aa|U|834
6T83|1|Aa|G|835
6T83|1|Aa|A|836
6T83|1|Aa|A|837
6T83|1|Aa|G|838
6T83|1|Aa|C|839
*
6T83|1|Aa|G|854
6T83|1|Aa|U|855
6T83|1|Aa|G|856
6T83|1|Aa|G|857
6T83|1|Aa|A|858
6T83|1|Aa|G|859

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L19-A

Chain Da

60S ribosomal protein L2-A

Chain aa

60S ribosomal protein L43-A