IL_6T83_302

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

6T83|1|Aa|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_302 not in the Motif Atlas

Geometric match to IL_5J7L_352

Geometric discrepancy: 0.3053

The information below is about IL_5J7L_352

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

6T83|1|Aa|G|1623
6T83|1|Aa|G|1624
*
6T83|1|Aa|U|1819
6T83|1|Aa|U|1820
6T83|1|Aa|U|1821
6T83|1|Aa|C|1822

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L34-A

Chain V

60S ribosomal protein L38