IL_6T83_407

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUA*UAAUU

Length

9 nucleotides

Bulged bases

6T83|1|a|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_407 not in the Motif Atlas

Geometric match to IL_2O3Y_003

Geometric discrepancy: 0.3314

The information below is about IL_2O3Y_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

6T83|1|a|G|480
6T83|1|a|A|481
6T83|1|a|U|482
6T83|1|a|A|483
*
6T83|1|a|U|504
6T83|1|a|A|505
6T83|1|a|A|506
6T83|1|a|U|507
6T83|1|a|U|508

Current chains

Chain a

18S rRNA

Nearby chains

Chain 5

40S ribosomal protein S30-A

Chain k

40S ribosomal protein S9-A