3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
GAUA*UAAUU
Length
9 nucleotides
Bulged bases
6T83|1|a|A|506
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T83_407 not in the Motif Atlas
Geometric match to IL_2O3Y_003
Geometric discrepancy: 0.3314
The information below is about IL_2O3Y_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_51479.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
10

Unit IDs

6T83|1|a|G|480
6T83|1|a|A|481
6T83|1|a|U|482
6T83|1|a|A|483
*
6T83|1|a|U|504
6T83|1|a|A|505
6T83|1|a|A|506
6T83|1|a|U|507
6T83|1|a|U|508

Current chains

Chain a
18S rRNA

Nearby chains

Chain 5
40S ribosomal protein S30-A
Chain k
40S ribosomal protein S9-A

Coloring options:


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