IL_6T83_456

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_456 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.2174

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6T83|1|a|G|1638
6T83|1|a|C|1639
6T83|1|a|C|1640
6T83|1|a|C|1641
*
6T83|1|a|G|1760
6T83|1|a|U|1761
6T83|1|a|A|1762
6T83|1|a|A|1763
6T83|1|a|C|1764

Current chains

Chain a

18S rRNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain Aa

Large subunit ribosomal RNA; LSU rRNA

Chain Y

60S ribosomal protein L41-A