3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
GCCC*GUAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T83_456 not in the Motif Atlas
Geometric match to IL_4V88_464
Geometric discrepancy: 0.2174
The information below is about IL_4V88_464
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65718.1
Basepair signature
cWW-cSH-cWS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6T83|1|a|G|1638
6T83|1|a|C|1639
6T83|1|a|C|1640
6T83|1|a|C|1641
*
6T83|1|a|G|1760
6T83|1|a|U|1761
6T83|1|a|A|1762
6T83|1|a|A|1763
6T83|1|a|C|1764

Current chains

Chain a
18S rRNA

Nearby chains

Chain 8
Transfer RNA; tRNA
Chain Aa
Large subunit ribosomal RNA; LSU rRNA
Chain Y
60S ribosomal protein L41-A

Coloring options:


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