IL_6T83_463

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_463 not in the Motif Atlas

Geometric match to IL_4V88_471

Geometric discrepancy: 0.2142

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6T83|1|a|U|1669
6T83|1|a|G|1670
6T83|1|a|A|1671
6T83|1|a|G|1672
*
6T83|1|a|C|1729
6T83|1|a|A|1730
6T83|1|a|A|1731
6T83|1|a|A|1732

Current chains

Chain a

18S rRNA

Nearby chains

Chain Aa

Large subunit ribosomal RNA; LSU rRNA

Chain h

40S ribosomal protein S6-A

Chain j

40S ribosomal protein S8-A