IL_6T83_475

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

6T83|1|1b|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_475 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.2242

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6T83|1|1b|G|2828
6T83|1|1b|U|2829
6T83|1|1b|G|2830
*
6T83|1|1b|U|2858
6T83|1|1b|U|2859
6T83|1|1b|U|2860
6T83|1|1b|U|2861
6T83|1|1b|U|2862

Current chains

Chain 1b

25S rRNA

Nearby chains

Chain By

60S ribosomal protein L3

Chain Iy

60S ribosomal protein L10