IL_6T83_484
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAUUU*AUAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6T83_484 not in the Motif Atlas
- Geometric match to IL_8SP9_002
- Geometric discrepancy: 0.3349
- The information below is about IL_8SP9_002
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6T83|1|Aa|C|427
6T83|1|Aa|A|428
6T83|1|Aa|U|429
6T83|1|Aa|U|430
6T83|1|Aa|U|431
*
6T83|1|Aa|A|628
6T83|1|Aa|U|629
6T83|1|Aa|A|630
6T83|1|Aa|U|631
6T83|1|Aa|G|632
Current chains
- Chain Aa
- 25S rRNA
Nearby chains
- Chain Ca
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P
- 60S ribosomal protein L32
- Chain Q
- 60S ribosomal protein L33-A
- Chain Qa
- 60S ribosomal protein L16-A
Coloring options: