IL_6T83_490

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGC*GUAAA

Length

8 nucleotides

Bulged bases

6T83|1|Aa|A|2242, 6T83|1|Aa|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_490 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2607

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6T83|1|Aa|U|2200
6T83|1|Aa|G|2201
6T83|1|Aa|C|2202
*
6T83|1|Aa|G|2240
6T83|1|Aa|U|2241
6T83|1|Aa|A|2242
6T83|1|Aa|A|2243
6T83|1|Aa|A|2244

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain Da

60S ribosomal protein L2-A

Chain a

Small subunit ribosomal RNA; SSU rRNA