IL_6T83_499

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GACGGA*UUGUAC

Length

12 nucleotides

Bulged bases

6T83|1|a|G|1150, 6T83|1|a|A|1631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T83_499 not in the Motif Atlas

Geometric match to IL_8VM9_004

Geometric discrepancy: 0.3771

The information below is about IL_8VM9_004

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6T83|1|a|G|1146
6T83|1|a|A|1147
6T83|1|a|C|1148
6T83|1|a|G|1149
6T83|1|a|G|1150
6T83|1|a|A|1151
*
6T83|1|a|U|1627
6T83|1|a|U|1628
6T83|1|a|G|1629
6T83|1|a|U|1630
6T83|1|a|A|1631
6T83|1|a|C|1632

Current chains

Chain a

18S rRNA

Nearby chains

Chain 1

40S ribosomal protein S26-A

Chain d

40S ribosomal protein S2