IL_6TB3_031
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TB3_031 not in the Motif Atlas
- Homologous match to IL_4V88_413
- Geometric discrepancy: 0.1547
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
6TB3|1|2|A|550
6TB3|1|2|G|551
6TB3|1|2|G|552
6TB3|1|2|G|553
6TB3|1|2|C|554
6TB3|1|2|A|555
6TB3|1|2|A|556
6TB3|1|2|G|557
*
6TB3|1|2|C|587
6TB3|1|2|U|588
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain A
- 40S ribosomal protein S3
- Chain R
- 40S ribosomal protein S2
- Chain W
- 40S ribosomal protein S9-A
- Chain g
- 40S ribosomal protein S30-A
Coloring options: