IL_6TB3_054

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_054 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0867

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6TB3|1|2|G|1111
6TB3|1|2|G|1112
6TB3|1|2|A|1113
6TB3|1|2|G|1114
6TB3|1|2|U|1115
6TB3|1|2|A|1116
6TB3|1|2|U|1117
6TB3|1|2|G|1118
*
6TB3|1|2|U|1129
6TB3|1|2|G|1130
6TB3|1|2|A|1131
6TB3|1|2|A|1132
6TB3|1|2|A|1133
6TB3|1|2|C|1134

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain AS

60S ribosomal protein L41-B

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain c

40S ribosomal protein S23-A