IL_6TB3_074
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TB3_074 not in the Motif Atlas
- Homologous match to IL_4V88_459
- Geometric discrepancy: 0.0891
- The information below is about IL_4V88_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10447.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6TB3|1|2|G|1480
6TB3|1|2|C|1481
6TB3|1|2|C|1482
6TB3|1|2|A|1483
6TB3|1|2|G|1484
6TB3|1|2|C|1485
6TB3|1|2|G|1486
6TB3|1|2|A|1487
*
6TB3|1|2|U|1519
6TB3|1|2|U|1520
6TB3|1|2|G|1521
6TB3|1|2|U|1522
6TB3|1|2|G|1523
6TB3|1|2|A|1524
6TB3|1|2|A|1525
6TB3|1|2|A|1526
6TB3|1|2|C|1527
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain A
- 40S ribosomal protein S3
- Chain B
- 40S ribosomal protein S5
- Chain F
- 40S ribosomal protein S16-A
- Chain I
- 40S ribosomal protein S19-A
- Chain J
- 40S ribosomal protein S20
- Chain M
- 40S ribosomal protein S29-A
Coloring options: