IL_6TB3_088
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUCA*UUUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TB3_088 not in the Motif Atlas
- Geometric match to IL_4V88_473
- Geometric discrepancy: 0.1433
- The information below is about IL_4V88_473
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6TB3|1|2|C|1675
6TB3|1|2|U|1676
6TB3|1|2|C|1677
6TB3|1|2|A|1678
*
6TB3|1|2|U|1723
6TB3|1|2|U|1724
6TB3|1|2|U|1725
6TB3|1|2|G|1726
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain AE
- 60S ribosomal protein L24-A
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain T
- 40S ribosomal protein S6-A
- Chain V
- 40S ribosomal protein S8
Coloring options: