IL_6TB3_142
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6TB3|1|BQ|C|1196, 6TB3|1|BQ|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TB3_142 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0802
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6TB3|1|BQ|G|1194
6TB3|1|BQ|A|1195
6TB3|1|BQ|C|1196
6TB3|1|BQ|A|1197
6TB3|1|BQ|C|1198
6TB3|1|BQ|C|1199
6TB3|1|BQ|A|1200
6TB3|1|BQ|C|1201
6TB3|1|BQ|A|1202
6TB3|1|BQ|A|1203
6TB3|1|BQ|A|1204
6TB3|1|BQ|A|1205
*
6TB3|1|BQ|U|1299
6TB3|1|BQ|G|1300
6TB3|1|BQ|A|1301
6TB3|1|BQ|A|1302
6TB3|1|BQ|A|1303
6TB3|1|BQ|A|1304
6TB3|1|BQ|U|1305
6TB3|1|BQ|G|1306
6TB3|1|BQ|G|1307
6TB3|1|BQ|A|1308
6TB3|1|BQ|U|1309
6TB3|1|BQ|G|1310
6TB3|1|BQ|G|1311
6TB3|1|BQ|C|1312
6TB3|1|BQ|G|1313
6TB3|1|BQ|C|1314
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AO
- Ubiquitin-60S ribosomal protein L40
- Chain AU
- 60S ribosomal protein L16-A
- Chain BA
- 60S ribosomal protein L3
- Chain BD
- 60S ribosomal protein L10
- Chain BK
- 60S ribosomal protein L33-A
- Chain BO
- 60S ribosomal protein L7-A
- Chain BR
- 5S ribosomal RNA; 5S rRNA
Coloring options: