IL_6TB3_162

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

6TB3|1|BQ|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_162 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.0793

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6TB3|1|BQ|U|1694
6TB3|1|BQ|U|1695
6TB3|1|BQ|A|1696
6TB3|1|BQ|A|1697
6TB3|1|BQ|C|1698
*
6TB3|1|BQ|G|1747
6TB3|1|BQ|G|1748
6TB3|1|BQ|A|1749
6TB3|1|BQ|A|1750
6TB3|1|BQ|G|1751
6TB3|1|BQ|A|1752

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AI

60S ribosomal protein L38

Chain BN

60S ribosomal protein L34-A