IL_6TB3_163

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_163 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.1064

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6TB3|1|BQ|U|1702
6TB3|1|BQ|U|1703
6TB3|1|BQ|A|1704
6TB3|1|BQ|U|1705
6TB3|1|BQ|C|1706
6TB3|1|BQ|A|1707
*
6TB3|1|BQ|U|1737
6TB3|1|BQ|C|1738
6TB3|1|BQ|U|1739
6TB3|1|BQ|U|1740
6TB3|1|BQ|A|1741
6TB3|1|BQ|U|1742
6TB3|1|BQ|G|1743

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AT

60S ribosomal protein L43-A

Chain BN

60S ribosomal protein L34-A