IL_6TB3_169

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6TB3|1|BQ|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_169 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.081

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6TB3|1|BQ|C|1918
6TB3|1|BQ|G|1919
6TB3|1|BQ|U|1920
6TB3|1|BQ|A|1921
6TB3|1|BQ|A|1922
6TB3|1|BQ|C|1923
*
6TB3|1|BQ|G|1928
6TB3|1|BQ|G|1929
6TB3|1|BQ|A|1930
6TB3|1|BQ|U|1931
6TB3|1|BQ|A|1932
6TB3|1|BQ|A|1933
6TB3|1|BQ|G|1934

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AS

60S ribosomal protein L41-B

Chain AT

60S ribosomal protein L43-A