IL_6TB3_173

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6TB3|1|BQ|U|2159, 6TB3|1|BQ|U|2175, 6TB3|1|BQ|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_173 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0855

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6TB3|1|BQ|C|2156
6TB3|1|BQ|G|2157
6TB3|1|BQ|A|2158
6TB3|1|BQ|U|2159
6TB3|1|BQ|G|2160
6TB3|1|BQ|G|2161
*
6TB3|1|BQ|U|2173
6TB3|1|BQ|G|2174
6TB3|1|BQ|U|2175
6TB3|1|BQ|U|2176
6TB3|1|BQ|G|2177
6TB3|1|BQ|A|2178
6TB3|1|BQ|C|2179
6TB3|1|BQ|G|2180

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AT

60S ribosomal protein L43-A

Chain AW

60S ribosomal protein L2-A