IL_6TB3_179

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6TB3|1|BQ|A|2281, 6TB3|1|BQ|C|2287, 6TB3|1|BQ|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_179 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.0852

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6TB3|1|BQ|C|2277
6TB3|1|BQ|C|2278
6TB3|1|BQ|A|2279
6TB3|1|BQ|A|2280
6TB3|1|BQ|A|2281
6TB3|1|BQ|U|2282
6TB3|1|BQ|G|2283
6TB3|1|BQ|C|2284
6TB3|1|BQ|C|2285
6TB3|1|BQ|U|2286
6TB3|1|BQ|C|2287
6TB3|1|BQ|G|2288
*
6TB3|1|BQ|C|2304
6TB3|1|BQ|G|2305
6TB3|1|BQ|C|2306
6TB3|1|BQ|G|2307

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AS

60S ribosomal protein L41-B