IL_6TB3_200

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6TB3|1|BQ|G|2945, 6TB3|1|BQ|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_200 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0766

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6TB3|1|BQ|C|2879
6TB3|1|BQ|U|2880
6TB3|1|BQ|C|2881
*
6TB3|1|BQ|G|2943
6TB3|1|BQ|U|2944
6TB3|1|BQ|G|2945
6TB3|1|BQ|A|2946
6TB3|1|BQ|G|2947

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain BA

60S ribosomal protein L3