IL_6TB3_210

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

6TB3|1|BQ|U|3056, 6TB3|1|BQ|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_210 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.0851

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6TB3|1|BQ|U|3054
6TB3|1|BQ|U|3055
6TB3|1|BQ|U|3056
6TB3|1|BQ|U|3057
6TB3|1|BQ|U|3058
6TB3|1|BQ|G|3059
*
6TB3|1|BQ|C|3084
6TB3|1|BQ|G|3085
6TB3|1|BQ|A|3086
6TB3|1|BQ|A|3087
6TB3|1|BQ|G|3088

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AE

60S ribosomal protein L24-A

Chain BA

60S ribosomal protein L3

Chain BC

60S ribosomal protein L31-A