IL_6TB3_212

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

6TB3|1|BQ|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_212 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.0678

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

6TB3|1|BQ|A|3103
6TB3|1|BQ|U|3104
6TB3|1|BQ|U|3105
6TB3|1|BQ|A|3106
6TB3|1|BQ|U|3107
*
6TB3|1|BQ|A|3127
6TB3|1|BQ|G|3128
6TB3|1|BQ|A|3129
6TB3|1|BQ|A|3130
6TB3|1|BQ|U|3131

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AD

60S ribosomal protein L9-A

Chain AO

Ubiquitin-60S ribosomal protein L40

Chain AU

60S ribosomal protein L16-A