IL_6TB3_228

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

6TB3|1|BQ|U|3354, 6TB3|1|BQ|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TB3_228 not in the Motif Atlas

Geometric match to IL_5TBW_136

Geometric discrepancy: 0.2726

The information below is about IL_5TBW_136

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6TB3|1|BQ|C|3349
6TB3|1|BQ|C|3350
*
6TB3|1|BQ|G|3353
6TB3|1|BQ|U|3354
6TB3|1|BQ|U|3355
6TB3|1|BQ|G|3356

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain V

40S ribosomal protein S8