IL_6TB3_229
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CU*AAG
- Length
- 5 nucleotides
- Bulged bases
- 6TB3|1|BR|A|64
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TB3_229 not in the Motif Atlas
- Homologous match to IL_5TBW_372
- Geometric discrepancy: 0.1101
- The information below is about IL_5TBW_372
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6TB3|1|BR|C|15
6TB3|1|BR|U|16
*
6TB3|1|BR|A|63
6TB3|1|BR|A|64
6TB3|1|BR|G|65
Current chains
- Chain BR
- 5S rRNA
Nearby chains
- Chain AG
- 60S ribosomal protein L11-B
- Chain BD
- 60S ribosomal protein L10
- Chain BI
- 60S ribosomal protein L5
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: