IL_6TBV_032

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6TBV|1|16S1|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_032 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0651

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6TBV|1|16S1|C|569
6TBV|1|16S1|G|570
6TBV|1|16S1|U|571
6TBV|1|16S1|A|572
6TBV|1|16S1|A|573
6TBV|1|16S1|A|574
6TBV|1|16S1|G|575
*
6TBV|1|16S1|C|880
6TBV|1|16S1|G|881

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S121

30S ribosomal protein S12

Chain S171

30S ribosomal protein S17