IL_6TBV_039

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

6TBV|1|16S1|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_039 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.0623

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6TBV|1|16S1|U|662
6TBV|1|16S1|A|663
6TBV|1|16S1|G|664
6TBV|1|16S1|A|665
6TBV|1|16S1|G|666
*
6TBV|1|16S1|U|740
6TBV|1|16S1|G|741
6TBV|1|16S1|G|742
6TBV|1|16S1|A|743

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S061

30S ribosomal protein S6

Chain S151

30S ribosomal protein S15

Chain S181

30S ribosomal protein S18