IL_6TBV_078

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_078 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0706

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6TBV|1|23S1|C|239
6TBV|1|23S1|C|240
6TBV|1|23S1|A|241
6TBV|1|23S1|G|242
6TBV|1|23S1|U|243
6TBV|1|23S1|A|244
6TBV|1|23S1|G|245
*
6TBV|1|23S1|C|253
6TBV|1|23S1|G|254
6TBV|1|23S1|A|255
6TBV|1|23S1|A|256
6TBV|1|23S1|C|257
6TBV|1|23S1|G|258

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L151

50S ribosomal protein L15

Chain L351

50S ribosomal protein L35