IL_6TBV_087

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6TBV|1|23S1|G|801, 6TBV|1|23S1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_087 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0608

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6TBV|1|23S1|G|674
6TBV|1|23S1|A|675
6TBV|1|23S1|A|676
6TBV|1|23S1|A|677
6TBV|1|23S1|C|678
*
6TBV|1|23S1|G|799
6TBV|1|23S1|A|800
6TBV|1|23S1|G|801
6TBV|1|23S1|A|802
6TBV|1|23S1|U|803
6TBV|1|23S1|A|804
6TBV|1|23S1|G|805
6TBV|1|23S1|C|806

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L041

50S ribosomal protein L4

Chain L151

50S ribosomal protein L15