IL_6TBV_111

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

6TBV|1|23S1|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_111 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.2013

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

6TBV|1|23S1|G|1059
6TBV|1|23S1|U|1060
6TBV|1|23S1|U|1061
6TBV|1|23S1|G|1062
*
6TBV|1|23S1|C|1076
6TBV|1|23S1|A|1077
6TBV|1|23S1|U|1078
6TBV|1|23S1|C|1079

Current chains

Chain 23S1

23S rRNA

Nearby chains