IL_6TBV_191

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TBV_191 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0529

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6TBV|1|23S1|U|1851
6TBV|1|23S1|U|1852
6TBV|1|23S1|A|1853
6TBV|1|23S1|A|1854
6TBV|1|23S1|U|1855
6TBV|1|23S1|U|1856
6TBV|1|23S1|G|1857
6TBV|1|23S1|A|1858
6TBV|1|23S1|U|1859
6TBV|1|23S1|G|1860
*
6TBV|1|23S1|U|1882
6TBV|1|23S1|U|1883
6TBV|1|23S1|G|1884
6TBV|1|23S1|A|1885
6TBV|1|23S1|U|1886
6TBV|1|23S1|C|1887
6TBV|1|23S1|G|1888
6TBV|1|23S1|A|1889
6TBV|1|23S1|A|1890
6TBV|1|23S1|G|1891

Current chains

Chain 23S1

23S rRNA

Nearby chains